Yuichi Shiraishi (@friend1ws)
github

friend1ws

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  • Stars
    star
    142
  • Global Rank 160,251 (Top 6 %)
  • Followers 47
  • Following 5
  • Registered about 12 years ago
  • Most used languages
    Python
         61.9 %
    R
         23.8 %
    Perl
         4.8 %
    Groff     4.8 %
    C++
         4.8 %
  • Location 🇯🇵 Japan
  • Country Total Rank 3,429
  • Country Ranking
    Groff     8
    R
         25
    Perl
         105
    Python
         524
    C++
         4,101

Top repositories

1

nanomonsv

SV detection tool for nanopore sequence reads
Python
83
star
2

pmsignature

R package for extracting mutation signatures from a list of somatic mutations
R
36
star
3

EBCall

an empirical Bayesian framework for mutation detection from cancer genome sequencing data
Perl
31
star
4

SAVNet

detection of mutations causing splicing change
Python
12
star
5

iravnet

intron retention associated variant detection project
Python
8
star
6

intron_retention_utils

script for extracting intron retention events
Python
5
star
7

fusion_utils

utility for comparing fusion results
Python
3
star
8

sv_utils

package for analyzing GenomonSV results
Python
3
star
9

fusion_db

Database for fusion gene
Python
2
star
10

annot_utils

scripts processing annotation data from UCSC
Python
2
star
11

savnet_paper

resource for savant paper
R
2
star
12

PDL1_pipeline

script for CD274 project
Groff
2
star
13

cancer_gene_db

Database for known cancer genes
Python
1
star
14

LDA-practice

practice code for LDA
Python
1
star
15

genomon_rna_gce

Perform Genomon RNA pipeline using Google Compute Engine
Python
1
star
16

centr_utils

utilities for centromere analysis
Python
1
star
17

tenx_utils

utility functions for analyzing 10X genomics data
Python
1
star
18

pmsignature_shiny

shiny programis for pmsignature
R
1
star
19

rankSynergy

a rank-based statistical test for measuring synergistic effects between two gene sets
C++
1
star
20

ggseqlogo

A lightweight package for generating sequence logos based on ggplot2
R
1
star
21

SF3B1ness

R package for obtaining SF3B1ness score
R
1
star