Frédéric Mahé (@frederic-mahe)
github

frederic-mahe

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  • Stars
    star
    752
  • Global Rank 39,909 (Top 2 %)
  • Followers 110
  • Following 1
  • Registered about 12 years ago
  • Most used languages
    Python
         50.0 %
    Shell
         40.0 %
    TeX
         10.0 %
  • Location 🇫🇷 France
  • Country Total Rank 1,181
  • Country Ranking
    Python
         212
    TeX
         594
    Shell
         655

Top repositories

1

Hardware-Target-Game-Database

Flash-cart optimized file and folder layouts.
Python
647
star
2

Analogue-Pocket

An issue tracker for Analogue's Pocket, a handheld FPGA device released in December 2021
57
star
3

swarm

A robust and fast clustering method for amplicon-based studies
Python
32
star
4

stampa

Sequence Taxonomic Assignment by Massive Pairwise Alignments
Shell
14
star
5

mumu

C++ implementation of lulu, a R package for post-clustering curation of metabarcoding data
Shell
6
star
6

pairdist

Creates a neighbor-joining tree from a set of sequences, using maximum likelihood distances based on pairwise sequence alignment
Python
5
star
7

swarm-tests

Datasets and scripts to test the amplicon clustering method swarm
Shell
2
star
8

vsearch-tests

unit tests for vsearch
Shell
1
star
9

ten_simple_rules_for_code_refactoring

TeX
1
star
10

fred-metabarcoding-pipeline

Fred's metabarcoding pipeline: from raw fastq files to an occurrence table at light-speed
Python
1
star
11

BIO9905MERG1_lulu_seminar

post-clustering curation of metabarcoding data with lulu
1
star
12

metabarcoding-pipeline

A complete description of my current metabarcoding pipeline
1
star
13

bioinformatics-scripts

A collection of useful bioinformatics scripts
Python
1
star