Francisco Zorrilla (@franciscozorrilla)
github

franciscozorrilla

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Top repositories

1

metaGEM

💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
Python
187
star
2

SymbNET

Teaching materials for SymbNET course: from MAGs to GEMs
Jupyter Notebook
12
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3

EMBOMicroCom

Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities
R
8
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4

metaGEM_paper

Repo housing 💎 metaGEM paper results
7
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5

unseenbio_metaGEM

metaGEM applied to unseenbio WGS sequencing samples
7
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6

Chalmers-iGEM2018

COM-dFBA is a MATLAB based COMmunity Dynamic Flux Balance Analysis framework developed by the Chalmers iGEM 2018 team. For this work, we were nominated for best modeling at the Giant Jamboree.
HTML
2
star
7

lichens

Metabolic modeling of lichen metagenomes
1
star