Eike Steinig (@esteinig)
github

esteinig

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  • Stars
    star
    289
  • Global Rank 91,821 (Top 4 %)
  • Followers 107
  • Following 64
  • Registered over 9 years ago
  • Most used languages
    Python
         47.8 %
    Rust
         21.7 %
    R
         17.4 %
    Nextflow     4.3 %
    HTML
         4.3 %
    Svelte     4.3 %
  • Location 🇦🇺 Australia
  • Country Total Rank 1,706
  • Country Ranking
    Nextflow     14
    Svelte     14
    Rust
         54
    R
         132
    Python
         811
    HTML
         1,402

Top repositories

1

nanoq

Minimal but speedy quality control for nanopore reads in Rust 🐻
Rust
102
star
2

sketchy

Genomic neighbor typing of bacterial pathogens using MinHash 🐀
Rust
44
star
3

vircov

Viral genome coverage evaluation for metagenomic diagnostics 🩸
Rust
25
star
4

netview

Mutual nearest neighbor graphs and data visualization for genomic population networks 🐙
R
17
star
5

scrubby

Background depletion/extraction using k-mer and/or alignment methods 🐼
Rust
13
star
6

brick

BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons 🦠
Svelte
12
star
7

BRIGAD3

D3 and Vue component for visualization of bacterial genome assemblies from nanopore sequence data
Python
10
star
8

netviewP

NetView for Python
Python
8
star
9

sccion

Genotyping toolkit and long-read assembly pipelines for Staphylococcus aureus *under construction* 🍇
Python
7
star
10

achilles

Artificial neural networks for taxonomic nanopore signal classification in host microbiomes *update soon* 🌳
Python
7
star
11

shinyGenes

Gene Segment Plots
R
6
star
12

netviewr

Graph decorators for data and population structure visualization 🐙
R
6
star
13

dartqc

Quality Control for DArT SNPs
Python
6
star
14

poremongo

Nanopore signal management and neural network training data compiler in MongoDB *update soon* 🌱
Python
4
star
15

nctc-tools

Data mining and analysis pipeline for complete bacterial genome assemblies from the NCTC 🐛
Python
4
star
16

thicket

Parallel bootstrapping for maximum-likelihood phylogenies wrapping RAxML-NG, PhyML and FastTree 🌿
3
star
17

geneD3

Sequence Comparisons D3
HTML
3
star
18

nf-mvp

A minimum viable Nextflow pipeline (Bioinformatics Clinic)
Nextflow
3
star
19

melioidosis

Python
2
star
20

machine

Welcome to the Machine
Python
2
star
21

ca-mrsa

Emergence of community-associated MRSA
R
2
star
22

cerebro

Metagenomic diagnostics stack for low abundance sample types and clinical reporting
Rust
2
star
23

pnodes

Pretty print pbsnodes for Torque/PBS.
Python
1
star
24

critter

BEAST models for pathogen transmission dynamics in Python
Python
1
star