Discover @egonw Open Source projects

Egon Willighagen (@egonw)

egonw

Stars
353
Global Rank 78,049 (Top 3 %)
Followers 266
Following 30
Registered about 16 years ago
Most used languages

Java
48.5 %

Groovy
15.2 %

R
12.1 %

PHP
6.1 %

HTML
4.5 %

TeX
4.5 %

JavaScript
4.5 %

Python
1.5 %

Makefile 1.5 %

Graphviz (DOT) 1.5 %
Location 🇳🇱 Netherlands
Country Total Rank 1,425
Country Ranking

Graphviz (DOT) 1

Groovy
6

R
47

TeX
138

Java
161

Makefile 178

HTML
590

PHP
717

Python
3,545

JavaScript
3,970

cdkbook

Groovy Cheminformatics with the Chemistry Development Kit

rrdf

R package for handling RDF data.

genalg

chembl.rdf

Scripts to create RDF for ChEMBL.

gtd

Git-based ToDo tool.

jqudt

Java library for working with the QUDT ontology and data using it.

semanticchemistry

Automatically exported from code.google.com/p/semanticchemistry

cheminfbenchmark

Cheminformatics Benchmark Toolkit

bacting

Bacting := acting as the Bioclipse TNG

SARS-CoV-2-Queries

Wikidata Queries around the SARS-CoV-2 virus and pandemic

bioclipse.ons

Open Notebook Science Solubility Project

chembl-rdf-paper

ChEMBL-RDF paper

ojdcheck

OpenJavaDocCheck

groovy.cdk

Website with code examples from the "Groovy Cheminformatics with the Chemistry Development Kit" book.

org.openscience.cdk

Repository with Eclipse bundle exports of the CDK modules and matching required third party libraries.

citeulike

Copy of the SVN CiteULike repository to host any possible patches by my hand. I am not a main author of CiteULike.

vecmath

Public Domain implemenation of the Java Vecmath libraries.

old-rWikiPathways

R client package for the WikiPathways API.

CDKitty

The Chemistry Development Kit Google Wave Robot

BridgeDbR

BIoconductor R package for BridgeDb

RobotDF

Google Wave robot for RDF functionality

groovy-jcp

Groovy CDK-JChemPaint

egonw.github.com

Personal Homepage

groovy-citeulike

Groovy CiteULike scripts.

blueobelisk.userscript

Blue Obelisk Userscripts

wikidata-chemistry

Cache of Chemistry in Wikidata

odk

Orbital Development Kit

wikipathways-chromosomes

Mapping WikiPathways to chromosomes

rednael

IRC bot that propagates Git commit messages.

pubchem-cdk

PubChem from a CDK perspective.

acsrdf2010

owl:thing's for the ACS RDF symposium in August 2010 in Boston

xws-taverna

XWS Plugin for Taverna

ctr-cdk-groovy

CDK/Groovy answers to the Chemical Toolkit Rosetta

cdk-taverna

CDK-Taverna for Taverna 2.x

biomarkers

Biomarker collection.

jnchem

Java library to extract data from the Nature Chemistry journal.

cheminformatics.classics

Cheminformatics Classics

wikidata2pubchem

Repository to coordinate getting Wikidata compounds into PubChem

ambit

knime-chemspider

Source code for a ChemSpider query API plugin for KNIME.

ron

Tools for rdf.openmolecule.net

collaborative.cheminformatics

LaTeX sources for the book chapter.

phd-thesis-template

LaTeX template for a PhD thesis, using BibLaTeX and chapter-level reference sections.

nmrshiftdb-rdf

RDF interface to the NMRShiftDB data.

OpenScienceCitizenInitiative

Project to set up, organize, and govern an EU Citizen Initiative about Open Science

lavoisier

Oxygen is to breathing and lungs what lavoisier is to molecules and databases.

pathvisio

mscpils

Course Material for Programming in the Life Sciences

biblatex-biomedcentral

toxbank-api-beans

cito-update

jats

Repository with JATS of J.Cheminform. CC-BY articles

lipidmaps-wp-curation

Curation of lipid pathways

ons-wikidata

Open Notebook for Wikidata scripts

create-bridgedb-metabolites

Create BridgeDB identity mapping files from HMDB, ChEBI, and Wikidata

orn-ontology

Risk Assessment Ontology

chemfig

Archive of chemfig examples

cytoscape2gpml

chempaint

Chemical Structure plugin for PathVisio

r-gprofiler2

Copy of https://gl.cs.ut.ee/biit/r-gprofiler2

citeuliker

R Client library for CiteULike.

chemojava

Automatically exported from code.google.com/p/chemojava

bioclipse.cir

Bioclipse plugin for the Chemical Identifier Resolver

bioclipse.bridgedb

Bioclipse BridgeDB integration

cb

Source code for the Chemical blogspace website

ops4j

Java client API for Open PHACTS.

bioclipse.openphacts

Bioclipse Open PHACTS

create-bridgedb-lycocyc

cdk-taverna-2

csrml-schema

cdk-cxsmiles

Dagstuhl CXSMILES

bioclipse.oscar

Oscar plugin for Bioclipse

moldbvalidator

Molecules Database Validator

ropenphacts

R client for Open PHACTS.

xenobiotic-metabolism

Collection of pathways related to xenobiotic metabolism

blueobelisk.debian

Debian meta package for Blue Obelisk software.

acs2ioc

Repo around the "Asking the American Chemical Society to join the Initiative for Open Citations" petition.

bioclipse.ambit

AMBIT plugin for Bioclipse

bioclipse.sb

Systems Biology support in Bioclipse

Science-3.0

Online collaborative science community.

rqudt

R package for unit conversion using the QUDT ontology

natprodlit

Repository with articles about natural products where the original structure was misasigned.

citedin

ci-advent-2017

Archive of Compound Interest Christmas Advent 2017

metawinterschool-bigcat

#metawinterschool contribution by BiGCaT