Discover @eead-csic-compbio Open Source projects

@eead-csic-compbio

eead-csic-compbio

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get_homologues

GET_HOMOLOGUES: a versatile software package for pan-genome analysis

allopolyploids

PhyloSD: Phylogenomic Subgenome Detection pipeline

chloroplast_assembly_protocol

A set of scripts for the assembly of chloroplast genomes out of whole-genome sequencing reads

metagenome_Pfam_score

Protocol for finding informative protein families and then using them to score metagenomic sets.

bioinformatics

Bioinformatics resources and best-practices for beginners

scripting_linux_shell

A collection of recipes to start scripting in the linux command line

primers4clades

Automated pipeline for the design of PCR primers for cross-species amplification of novel sequences

barley-agroclimatic-association

Association with high-resolution climate data reveals selection footprints in genomes of barley landraces across the Iberian peninsula

vcf-filter

Java tool to filter an input VCF file a la carte, based on HTSJDK and Apache commons CLI.

bioinformatica_estructural

Este material presenta algunos algoritmos para el estudio de la estructura molecular de proteínas y ácidos nucleicos. Introduce problemas (y estrategias para resolverlos) desde la estructura primaria a la cuaternaria. A lo largo hay referencias a artículos y ejercicios que a veces requieren conocimientos de programación.

coexpression_motif_discovery

Discovering cis-regulatory motifs in proximal promoters of plants in RSAT::Plants

EEADannot

Manual curation of selected DNA motifs and cis regulatory sites, mostly from plants

kmeleon

Pipeline for k-mer count analysis of genomic diversity

barleyGO

Software to annotate barley sequences with Gene Ontology terms

split_pairs

split_pairs.pl is a simple and efficient utility for pre-processing NGS sequence reads in FASTQ and FASTA formats, suited particularly for the task of sorting pair end reads and for modifying their headers with Perl-style regular expressions