Edgardo M. Ortiz (@edgardomortiz)
github

edgardomortiz

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  • Stars
    star
    229
  • Global Rank 110,764 (Top 4 %)
  • Followers 49
  • Following 18
  • Registered about 11 years ago
  • Most used languages
    Python
         100.0 %
  • Location 🇩🇪 Germany
  • Country Total Rank 5,615
  • Country Ranking
    Python
         861

Top repositories

1

vcf2phylip

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Python
197
star
2

Captus

Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
Python
17
star
3

paralog-finder

Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)
Python
10
star
4

sam2consensus

Get the consensus sequences from SAM (and BAM) files, ignoring the reference
Python
8
star
5

fineRADstructure-tools

Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
Python
8
star
6

NanoAmp

Species identification via Nanopore sequencing of barcoded amplicons
Python
1
star