Discover @dzyla Open Source projects

Dawid Zyla (@dzyla)

dzyla

Stars
127
Global Rank 173,526 (Top 6 %)
Followers 24
Following 68
Registered about 8 years ago
Most used languages

Python
85.0 %

JavaScript
5.0 %

HTML
5.0 %

Jupyter Notebook
5.0 %
Location 🇺🇸 United States
Country Total Rank 42,312
Country Ranking

Python
9,037

Follow_Relion_gracefully

New script to follow Relion projects in a browser!

MRC_napari_viewer

Cryo-EM data viewer in napari

EPU_beamtiltclasses

Very simple script for EPU users which adds beam tilt classes to the star file

biorxiv_search

Fast semantic search for biorXiv manuscripts

Relion_follow_classification

Follow your classification and refinement in Relion the real time!

cryoEM_plotly

Plot the cryoEM maps using plotly and open them in the browser!

relion_to_cistem

Converts autopick cooridinates from Relion to cisTEM

cryoem_notebook

Cryo-EM notebook example for processing in Relion and cryoSPARC

Jupyter Notebook

umod_processing_scripts

A library of scripts which were used to analyze and visualize the data

relion_to_cryosparc2

Export coordinates from Relion to Cryosparc2

Relion_star_parser

A simple .star file parser which allows Relion star file plotting, modification and conversion

abs_correction

A small python script to correct absorbance for scattering

Fetch-full-sequences-from-Blast-NCBI

Download full sequences from blast protein aligement

proteom_histogram

Simple script to show histograms based on proteom. Works well with uniprot fasta files

select_micrographs_from_jpegs

MRCVolume_viewer

Preview mrc volume in a simple viewer!

system_utils

Some general system tools (info and GPU stress)

script_repo

Repository to keep some my scripts on Github

Hugo_shortcode_gallery

simple yet stylish Hugo shorcode gallery

MRC_map_to_cube

Convert tomography map from cuboid to cube which can be open in Relion