Devon Ryan (@dpryan79)
github

dpryan79

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  • Stars
    star
    512
  • Global Rank 56,572 (Top 2 %)
  • Followers 412
  • Registered almost 11 years ago
  • Most used languages
    C
         75.0 %
    Python
         16.7 %
    R
         8.3 %
  • Location 🇨🇭 Switzerland
  • Country Total Rank 676
  • Country Ranking
    C
         71
    R
         317
    Python
         1,884

Top repositories

1

ChromosomeMappings

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
219
star
2

MethylDackel

A (mostly) universal methylation extractor for BS-seq experiments.
C
139
star
3

libBigWig

A C library for handling bigWig files
C
68
star
4

SE-MEI

Tools for finding mobile element insertions from single-end datasets
C
19
star
5

MethIndelRealigner

A local realigner around InDels for MethylSeq data
C
12
star
6

Misc

Misc. utilities
C
11
star
7

bison

Bisulfite alignment on nodes of a cluster
C
9
star
8

Answers

Random code produced to answer questions on biostars/seqanswers/etc.
Python
7
star
9

libGTF

A library for processing and searching GTF and BED files
C
6
star
10

lib2bit

A C library for accessing 2bit files
C
4
star
11

BBMeth

BBMeth: An R package for fitting methylation data with a beta-binomial model
R
3
star
12

RNAcentralTools

A set of tools useful for using RNAcentral in smallRNAseq analyses.
C
2
star
13

HTCondor-galaxy

A docker container for layering HTCondor on top of a Galaxy docker image
Python
2
star