Discover @douglasgscofield Open Source projects

Douglas G. Scofield (@douglasgscofield)

douglasgscofield

Stars
79
Global Rank 246,367 (Top 9 %)
Followers 59
Following 11
Registered over 12 years ago
Most used languages

R
31.3 %

C++
25.0 %

Perl
25.0 %

C
12.5 %

Awk 6.3 %
Location 🇸🇪 Sweden
Country Total Rank 2,345
Country Ranking

Awk 3

Perl
17

R
75

C++
494

C
797

bioinfo

Various bioinformatics tools

PacBio-utilities

Collection of utilities for working with PacBio-based assemblies

tinyutils

Collection of tiny utilities for working on data streams

hcluster

My git clone of Heng Li's hcluster from http://sourceforge.net/p/treesoft/code/HEAD/tree/branches/lh3/

readGenalex

R package for reading GenAlEx-format genotype files

dispr

Degenerate In-Silico PcR

sparseMEM-big

Big-genome modification to sparseMEM from Khan et al.

fastrank

R package providing fast ranking for integer and numeric vectors, an alternative to calling .Internal(rank(...))

snpEffect

Determine the effect of individual SNPs and indels

nestedRanksTest

R package providing a mixed-model Mann-Whitney-Wilcoxon test with nested ranks

yoruba

Query and modify BAM file contents; provides functions missing from some other tools

dispersalDiversity

Analyse individual and genetic diversity of dispersal processes in biological populations

add-to-Qiime-DB

Small set of scripts to ease the expansion of a Qiime reference database

R-package-utilities

Collection of files, templates, tips, etc. to ease the creation and maintenance of R packages

seqtools-4.28

My version of https://www.sanger.ac.uk/resources/software/seqtools/ 4.28, adds extra dotplot options

MLGtest

Implements a conservative test for asexuality based on the number of observed multilocus genotypes

jmers

Kmer-guided processing of jumping reads