David Koslicki (@dkoslicki)
github

dkoslicki

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  • Stars
    star
    135
  • Global Rank 166,572 (Top 6 %)
  • Followers 59
  • Following 7
  • Registered almost 11 years ago
  • Most used languages
    Python
         64.3 %
    Julia
         28.6 %
    C++
         7.1 %
  • Location πŸ‡ΊπŸ‡Έ United States
  • Country Total Rank 36,473
  • Country Ranking
    Julia
         513
    Python
         7,918

Top repositories

1

CMash

Fast and accurate set similarity estimation via containment min hash
Python
42
star
2

MetaPalette

Metagenomic profiling and phylogenetic distances via common kmers
Python
41
star
3

MinHashMetagenomics

Fast approximation of similarity for sets of very different sizes
Python
18
star
4

EMDeBruijn

Earth mover's distance between de Bruijn graphs
C++
7
star
5

EMDUnifrac

Computation of Unifrac using Earth Movers Distance
Python
6
star
6

ARK

Aggregation of kmers: preprocessing step for kmer-based metagenomics taxonomic profiling techniques
Julia
4
star
7

Quikr

Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing.
Julia
3
star
8

CAMIKraken

A Dockerfile and wrappers for the Kraken metagenomic classifier
Python
3
star
9

PressPurt

The core algorithm for the Koslicki & Novak JMB paper (2018)
Python
2
star
10

TAMPA

A collection of tools to visualize CAMI profiling outputs
Python
2
star
11

NCATS

Python
2
star
12

CAMIARKQuikr

The ARK+Quikr algorithm in a format for the CAMI competition
Julia
1
star
13

MultiresolutionBloomFilters

1
star
14

CommonKmers

Strain specific taxonomic profiling tool
Julia
1
star
15

MedianUnifrac

Computing medians with respect to the UniFrac metric
Python
1
star