Discover @dbolser Open Source projects

Dan Bolser (@dbolser)

dbolser

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Registered about 15 years ago
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Location 🇬🇧 United Kingdom
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genotyping_23andme

PGSC

Code for the Potato Genome Sequencing Consortium, but hopefully generic enough.

Debian-MediaWiki-Extensions

Setting up a repo to store files related to packaging MediaWiki-Extensions for Debian

sandbox

Learning how to be a git.

MediaWiki-Extension-VariablesExtension

A very simple MediaWiki extension that allows you to define a variable on a page, use it later in that same page, change its value, possibly to a value given by an expression in terms of the old value, etc.

The-Clear-Fields-Chromium-extension

Clear Fields is a simple Chromium extension to automatically 'clear' form fields in your browser

atac2syntab

A simple conversion utility for the Assembly To Assembly Comparison tool

GbrowseImage

A Mediawiki extension for displaying Gbrowse images.

ProtStat

ProdStat is an excellent data resource, however, the data is not available. Semantic MediaWiki can be used as one way to put the data on the 'semantic-web'. This project aims to do that.

GCal-Upcoming

The aim is to email myself a list of all events in my calendar(s), along with 'days until...', to help me plan for upcoming events better.

GFF-projection-script

A script to map GFF features via AGP or a 'mapping' GFF

BioWiki

Code for updating the activity of various 'BioWikis' on the http://bifx.org/wiki

PGSC-Sequence-Alignment-Mapping

Code to handle aligning sequences to the potato genome, including 454 paired-end sequences and various 'mate pair' sequences from BACs, fosmids, and tomato clones.

Bio-Das-ProServer

Just whacking ProServer into git for my own development needs

MediaWiki--

Perl code for working with templates (mostly)

TwitterBot---nowlistening-Perl-script-for-xmms

I wanted to tweet my important selection in music. Sometimes people ask why I wanted to do this...

docker-firefox

Dockerized Firefox

MetaBase

Code for synchronizing MetaBase with the Nucleic Acids Research Database Issue (online Molecular Biology Database Collection)

hlaimp-report

Report generator for HLA*IMP:2 results. See https://oxfordhla.well.ox.ac.uk/hla/

SwissProt-and-Tremble-RDB

Creates and populates a relational database with data from SwissProt style .dat files.

PDB-rsync

Scripts for synchronizing the PDB

BioMOP

A project to build a 'BioPerl' code metadata database using MOP

EnsEMBL--core-

For each organism supported by Ensembl, a species-specific Ensembl Core database stores the bulk of annotation information.

apachesolr_examples

Clone of repository here: https://drupal.org/project/apachesolr_examples

Extensions-Wiki

Code to help populate the Semantic MediaWiki 'Extensions' database from MW.Org