Davi Sidarta (@davisidarta)
github

davisidarta

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Top repositories

1

topometry

Systematically learn and evaluate manifolds from high-dimensional data
Python
93
star
2

dbMAP

A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions of samples on a personal laptop. Adds high-dimensional big data intrinsic structure to your clustering and data visualization workflow.
Python
46
star
3

fastlapmap

Fast Laplacian Eigenmaps: lightweight multicore LE for non-linear dimensional reduction with minimal memory usage. Outperforms sklearn's implementation and escalates linearly beyond 10e6 samples.
Python
22
star
4

humanlung

Code for the human lung integrated cell atlas generation as in Sidarta-Oliveira et al.
R
5
star
5

celltometry

A python library to orchestrate topological single-cell data analysis.
Python
1
star
6

pca-eval

Evaluate PCA's performance and appropriateness in single-cell genomics
Jupyter Notebook
1
star