Discover @davidchyou Open Source projects

Te-yuan Chyou (@davidchyou)

davidchyou

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Location 🇳🇿 New Zealand
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CRISPRDetect_2.4

Updated version of CRISPRDetect.

TracrPredictor

This application finds tracrRNA genes in a genome with previously annotated CDS. Reference: Chyou D. T. and Brown C. M. (2018): Prediction and diversity of tracrRNAs from type II CRISPR-Cas systems. RNA Biology.

PredictTerm

A machine-learning based tool to predict intrinsic and Rho-dependent transcription terminators.

CRISPR_Array_Reformat

Convert CRISPR arrays predicted by commonly used applications to CRISPRDetect-GFF format.

CRISPRTarget_express

A simple script that computes essential data of CRISPR spacer targets in genomes, that the web application CRISPRTarget generates.

CRISPRHost

Predict viral hosts by BLASTN sequence alignment using CRISPR spacers.

CRISPR_ACR_ABR

Presence of CRISPR-Cas systems, anti-CRISPR genes and antibiotic resistance genes in RefSeq bacterial genomes, including R scripts for testing the associations between them.