Discover @davidaknowles Open Source projects

David A Knowles (@davidaknowles)

davidaknowles

Stars
273
Global Rank 96,121 (Top 4 %)
Followers 120
Registered over 11 years ago
Most used languages

R
40.0 %

MATLAB
20.0 %

Python
13.3 %

C++
13.3 %

Stan 6.7 %

Jupyter Notebook
6.7 %

leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

eagle

An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified from RNA-seq

gprn

Gaussian Process Regression Network code

tf_net

A custom conv net for the DREAM ENCODE challenge

pydt

Pitman Yor diffusion tree sampler

dox

Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes

tensor_gp

Code for Tensor Gaussian Process Regression for predicting drug combination synergy, developed for the AstraZeneca-Sanger Drug Combination Prediction DREAM Challenge 2015: https://www.synapse.org/#!Synapse:syn4231880/wiki/235645

suez

R package for mapping response-expression QTLs

gamma_sgvb

dpvc

Dirichlet Process Variable Clustering

splice_wave

Jupyter Notebook

nsfa

Nonparametric Bayesian Sparse Factor Analysis

eagle1S

Re-implementation of EAGLE using Stan.

lacrosse

lacrosse: LAtent ChaRacteristics Of Small-molecule SEnsitivity. David A Knowles, Gina Bouchard, Sylvia Plevritis.

epidiff

pisquared

R package to estimate sharing between two arrays of p-values