Discover @danro9685 Open Source projects

Daniele Ramazzotti (@danro9685)

danro9685

Stars
31
Global Rank 477,996 (Top 17 %)
Followers 24
Following 13
Registered almost 11 years ago
Most used languages

R
75.0 %

MATLAB
25.0 %
Location 🇮🇹 Italy
Country Total Rank 3,939
Country Ranking

R
41

MATLAB
53

CIMLR

Implementations in both Matlab and R of the CIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/s41467-018-06921-8

SparseSignatures

Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009119

ASCETIC

ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal patterns involving alternations in driver genes from cancer genomics data. Manuscript published at: https://www.nature.com/articles/s41467-023-41670-3

OncoScore

OncoScore is a tool to measure the association of genes to cancer based on citation frequency in biomedical literature. The manuscript of the method is published on Scientific Reports and available at http://www.nature.com/articles/srep46290. The tool can also be used as a Web interface at https://www.galseq.com/next-generation-sequencing/oncoscore-software/.