Discover @cmungall Open Source projects

Chris Mungall (@cmungall)

cmungall

Stars
364
Global Rank 76,071 (Top 3 %)
Followers 271
Following 28
Registered almost 16 years ago
Most used languages

Prolog
42.3 %

Python
19.2 %

Perl
12.8 %

Jupyter Notebook
6.4 %

Makefile 6.4 %

Web Ontology Language 2.6 %

JavaScript
2.6 %

HTML
1.3 %

PostScript 1.3 %

Java
1.3 %

Shell
1.3 %

TeX
1.3 %

C
1.3 %
Location 🇺🇸 United States
Country Total Rank 18,690
Country Ranking

Web Ontology Language 2

Prolog
10

PostScript 192

Perl
293

Makefile 546

TeX
3,628

Jupyter Notebook
7,988

sparqlprog

logic programming with SPARQL

gosf2github

migrates tickets to GH from SF

owljs

Javascript wrapper for the OWLAPI

Web Ontology Language

blipkit

biological logic programming toolkit

cltools

tools for common-logic

sparqlprog_wikidata

Prolog module for querying wikidata using sparqlprog framework

sweet-obo-alignment

Alignment between ESIP SWEET and Open Bio Ontologies

semantic-llama

A knowledge extraction tool that uses a large language model to extract semantic information from text

intervaldb

prolog wrapper for PyGR Nested Containment Lists (NCLs)

linkml-phenopackets

EXPERIMENTAL rendering of phenopackets in linkml

json-flattener

Python library for denormalizing nested dicts or json objects to tables and back

obo2owl

collected documents specifying new obo<->owl translation

sql_compiler

Translates logic program queries to SQL

obo-scripts

standalone perl scripts for hacking obo files

sql_compiler-OLD

Draxler prolog to SQL compiler

wikidata_ontomatcher

Matches ontology classes against wikidata

rdfs2pl

RDF schema to prolog compiler

sparqlprog-python

python wrapper to sparqlprog logic programming framework

Jupyter Notebook

rdf_owl

OWL Library layered on top of SWI-Prolog semweb RDF library

data-stag

perl module for querying and manipulating complex data as recursively nested tag/value pairs (Structured tags or Simple Tree aggreggates)

bio-clif

Common logic axioms enhancing various bio-ontologies

prologterms-py

a python library for constructing prolog terms

mesh2owl

Yet another mesh to ontology conversion

DBIx-DBStag

Relational Database to Hierarchical (Stag/XML) Mapping

pl-sysbio

systems biology prolog library

mianct-schema

Minimal Information About a New Cell Type

bio-d2rq-mappings

Mappings to present bio-databases as SPARQL endpoints

formal-ontology-analysis

Jupyter Notebook

reactioner

Parses textual descriptions of reactions

Jupyter Notebook

swipl-owly

owl utilities enhancing swipl semweb library

plboqa

lov_schemas

Selected LOV schemas converted to prolog

mixs-source

bioperl-owl

bioperl extensions for OWL generation

agrovoc-obo

Agrovoc alignment to OBO Ontologies

shadowboxing-paper

draft of paper: Shadowboxing: Mirroring the TBox in the ABox

biostag

Stag SQL templates for various bio-databases

pldbc

Prolog database connectivity interface

agrovoc-obo-alignment

shoge

Serial Homology Ontology Generation Engine

ensvar-phenotype

ontologizing phenotype descriptions from ensvar

unipathway

semsimo

Semantic similarity ontology

obi-mappings

obo_ro

prolog predicate translation of OBO Relations Ontology

deep-learning-ontology-OLD

cpn

causal phenotype networks

stag

Collects Data::Stag, DBIx::DBStag, biostag

kboom-paper

capital-offence

Maintain list of proper nouns and inconsistent ontology labels

term-enrichment-protocol

Documentation on REST API and JSON payload for term enrichment services

data-manifesto

semantic modeling of data manifests

cell-type-schema

nlx-pl

Neurolex prolog utils

obo-relations-test

animal-disease

modal-in-owl

Notes on modeling modal quantifiers in OWL

nmdc-annotator

temporalized-relations-critique

paper in progress

obo_metadata

mosscide

sculptor

mixs-demo

multi-axial-ontology-test

Web Ontology Language

dbic_chado

Meant to be a standard DBIx::Class layer for the Chado database schema. Generated using DBIx::Class::Schema::Loader

owl-schema

schema for OWL in LinkML

index_util

dasher

Base framework for creating semantic QC dashboards

linkml-sesar

LinkML schema representation of SESAR / geosamples.org

yaml-ontology-metalanguage

A YAML syntax for OWL that adds MetaClasses (Design Patterns)

roge-engine

Rhino Ontology Generation Engine

envo-variable-parser

diseases2owl

Pipelines for making and normalizing OWL from various disease representations

rdf_owlpl

OWL using swipl semweb/rdf libraries

ner-obo-synonyms

Effect of OBO synonym scopes on Named Entity Recognition

science-award-analysis

science-award-analysis

gold-ontology

Jupyter Notebook

omb

ontology metadata browser

pl-genome

roge-name

Rhino Ontology Generation Engine

obo-anatomy-analysis

historic analysis of OBO anatomy ontologies

pl-semsim

semantic similarity implementation for swi-prolog

cmungall.github.com

obolog

Obolog specification (abandoned)

py-minimake

Minimal make-like pure python environment

Jupyter Notebook

disjointness-analysis

obo_core

pattern2owl

gemet-obo

Aligning GEMET to OBOs

omeo

Automatically exported from code.google.com/p/omeo

biowarehouse

Code to download and convert data from various online bioinformatics repositories

mixs-demo-combinatorial