Discover @christacaggiano Open Source projects

Christa Caggiano (@christacaggiano)

christacaggiano

Stars
73
Global Rank 261,080 (Top 9 %)
Followers 37
Following 9
Registered almost 9 years ago
Most used languages

Python
38.5 %

Jupyter Notebook
23.1 %

Julia
7.7 %

C
7.7 %

Shell
7.7 %

R
7.7 %

HTML
7.7 %
Location 🇺🇸 United States
Country Total Rank 53,362
Country Ranking

Julia
1,075

Jupyter Notebook
3,852

R
9,227

celfie

cfDNA cell type of origin estimation

Jupyter Notebook

cell-free-dna-reading-list

Important papers relating to the biology of cell free DNA

ENCODE_WGBS

a SGE, python, implementation of the ENCODE consortium whole genome bisulfite sequencing pipeline.

mybaits-probe-design

cfDNA methylation probe design from mybaits targeted sequencing

IBD

code for analyzing IBD networks

Jupyter Notebook

algorithms

notes for UCSF BMI 203, winter quarter 2018

treeWas-exploration

exploration of TreeWas/TreeWas2 code for the Zaitlen lab. Based on TreeWas developed by McVean Lab @ Oxford.

causal-inference-reading-list

Some papers I've come across on causal inference

ecaviar-in-julia

GWAS-EQTL colocalization written in the Julia programming language

neural-net

Artificial neural network to predict transcription factor binding.

C

C code written for Brandeis course Data Structures and Algorithms

genomics_conference_notes

Circle_RNA

Circle RNA exploration

machine_learning_exercises

Machine learning sample jupyter notebooks

Jupyter Notebook

exome_processing_pipeline

simple pipeline for processing exome sequencing data using BWA and GATK4

process-methylation