Discover @chrisamiller Open Source projects

Chris Miller (@chrisamiller)

chrisamiller

Stars
250
Global Rank 101,154 (Top 4 %)
Followers 113
Registered over 15 years ago
Most used languages

Ruby
30.8 %

R
23.1 %

Shell
15.4 %

Perl
15.4 %

Python
7.7 %

Dockerfile
7.7 %
Location 🇺🇸 United States
Country Total Rank 24,662
Country Ranking

R
247

Perl
1,073

Dockerfile
1,800

Ruby
8,074

Shell
9,823

fishplot

Create timecourse "fish plots" that show changes in the clonal architecture of tumors

readDepth

R package for inferring copy number from read depth

copyCat

a parallel R package for detecting copy-number alterations from short sequencing reads

rtm-cli

A command-line Remember the Milk client written in perl

igvScreenshot

Create static screenshots of genomic regions using IGV.

docker-genomic-analysis

Basic docker image for ad-hoc genomic analyses

commute-times

calculate drive times from multiple locations and visualize them in google earth

davidapi

A ruby wrapper for a few of the DAVID API functions for functional gene annotation (http://david.abcc.ncifcrf.gov/)

iTunes-to-Guayadeque

copies song ratings from iTunes to Guaydeque music player

docker-R-singlecell

tools for single-cell RNAseq analysis

bioinfoSnippets

Short snippets of code useful for bioinformatics and genomics

docker-phlat

dockerization of phlat hla typing tool

RMEmod

A tool for discovering functional modules by identifying recurrent and mutually exclusive mutational patterns in tumors

docker-meme

docker image for the MEME package (http://meme.ebi.edu.au/)