Daniel Bogema (@bogemad)
github

bogemad

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  • Stars
    star
    25
  • Global Rank 546,745 (Top 20 %)
  • Followers 9
  • Following 6
  • Registered almost 8 years ago
  • Most used languages
    Python
         77.8 %
    Shell
         11.1 %
    Perl
         11.1 %
  • Location 🇦🇺 Australia
  • Country Total Rank 8,050
  • Country Ranking
    Perl
         203
    Shell
         1,074
    Python
         1,539

Top repositories

1

snp_phylogeny

A pipeline for running SNP-based phylogenetic analysis
Python
6
star
2

trycycler_scripts

Scripts for genome assembly with trycycler
Shell
4
star
3

asqcan

Pipeline for bacterial genome assembly, quality control and annotation
Python
4
star
4

rucs_analysis

Collection of scripts for filtering and parse output from the RUCS pipeline
Python
3
star
5

cervus_parse

A script for parsing zipped vcf files (from an Ion Torrent run) to a genotype format for Cervus
Python
2
star
6

snpiphy

An automated snp phylogeny pipeline
Python
2
star
7

maker_genome_annotation

Collection of python scripts for genome annotation with maker
Perl
1
star
8

marker_gene_phylogeny

Runs phylosift to generate a marker gene phylogeny, useful for intra-genus comparisons.
Python
1
star
9

virseaqc

virseaqc - A combined pipeline for VIRal genome SEarching, Assembly, and Quality Control on Ion-Torrent instruments.
Python
1
star