Jim Shaw (@bluenote-1577)
github

bluenote-1577

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  • Stars
    star
    479
  • Global Rank 60,017 (Top 3 %)
  • Followers 102
  • Following 13
  • Registered over 9 years ago
  • Most used languages
    Rust
         71.4 %
    Jupyter Notebook
         14.3 %
    Python
         7.1 %
    HTML
         7.1 %

Top repositories

1

sylph

ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
Rust
169
star
2

skani

Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
Rust
166
star
3

floria

Strain-level haplotyping for metagenomes with short or long-reads.
Rust
37
star
4

flopp

flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
Rust
35
star
5

fairy

alignment-free coverage calculation for metagenomic binning >100 times faster
Rust
34
star
6

sylph-test

HTML
7
star
7

sce-aligner

A basic seed-chain-extend aligner with linear-gap cost chaining and quadratic time extension for experiments
Rust
6
star
8

sylph-utils

Utility scripts and helpers for sylph
Python
3
star
9

dbghaplo

Long-read haplotyping of small sequences with SNP-encoded de Bruijn graphs
Rust
3
star
10

local-kmer-selection-results

Jupyter Notebook
2
star
11

basic_seed_chainer

Rust
2
star
12

devider

Rust
2
star
13

plume

Rust
1
star
14

skani-test

Jupyter Notebook
1
star