Discover @bioinfo-ut Open Source projects

Bioinfo, IMCB, UT (@bioinfo-ut)

bioinfo-ut

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44.4 %

Python
33.3 %

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Location 🇪🇪 Estonia
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Python
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PlasmidSeeker

A k-mer based program for the identification of known plasmids from whole-genome sequencing reads

GenomeTester4

A toolkit for performing set operations - union, intersection and complement - on k-mer lists.

PhenotypeSeeker

Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains

GeneToCN

Gene copy number prediction from k-mer frequencies

AluMine

Scripts for discovery and genotyping polymorphic Alu element insertions in human genomes

PlantTaxSeeker

A pipeline to indentify taxon-specific k-mers in plant genomes

StrainSeeker

A bacterial identification program for fast identification of bacterial strains from raw sequencing reads

cRegions

primer3_masker

A sequence masking tool, both Primer3 integrated and standalone variants