Discover @bgruening Open Source projects

Björn Grüning (@bgruening)

bgruening

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Registered about 14 years ago
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Location 🇩🇪 Germany
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docker-galaxy-stable

🐳📊📚 Docker Images tracking the stable Galaxy releases.

galaxytools

🔬📚 Galaxy Tool wrappers

awesome-ukraine-support

A list of resources and inititive to help the Ukraine

conda_r_skeleton_helper

Cleaning up Conda r-packages

galaxy-rna-workbench

Galaxy RNA workbench

galaxy-ipython

🔬📚 IPython Integration into Galaxy

docker-jupyter-notebook

🐳 🔬 📚 Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy

docker-recipes

🐳 Dockerfiles to build Galaxy images

coding_for_big_data

X things you should take into consideration if you code for big data analysis

docker-ipython-notebook

🐳 🔬 📚 IPython running in a docker container. This image can be used to integrate IPython into Galaxy

docker-galaxy-imaging

🐳 Galaxy Docker repository with Imaging tools (Galaxy Imaging flavour)

galaxy-tricks

Useful tricks and tipps for Galaxy users

docker-galaxy-blast

🐳 Galaxy Docker repository with NCBI Blast tools (Galaxy Blast flavour)

methtools

tools for the processing of genome-wide bisulfite sequencing data

rbc_docs

RBC de.NBI documents

docker-busybox-bash

Minimal Docker Container with bash

docker-galaxy-ngs-preprocessing

🐳📊📚 Docker Images for NGS data preprocessing

test-data-registry

List, collect and reference good test datasets for tool and workflow testing

docker-galaxy-epigenetics

🐳📊📚 Docker Images for epigenetics data analysis

galaxy-rna-seq

🐳📊📚 Galaxy Docker Image to analyse RNA-Seq data

docker-galaxy-chemicaltoolbox

📚🐳 Galaxy flavor for Cheminformatics

pgchem_tigress

Pgchem::tigress is the chemoinformatics extension to the PostgreSQL DBMS. It enables PostgreSQL to handle molecules through SQL statements.

docker-galaxy-exome-seq

Galaxy Docker Image for Exome sequencing

gxtool_mapping

argparse2galaxy

Convert a python argparse defintion in a Galaxy Tool XML

blobtoolkit-server

Blobtoolkit server and viewer - used as interactive tools in Galaxy

gsh

freiburg

Social bug tracker for cities, states and countries

RNAcommender

genome-wide recommendation of RNA-protein interactions

silicos-it_store

Storage for silicos-it tarballs

download_store

universal storage

docker-galaxy-phylogenetics

🐳📊📚 Docker Images for molecular phylogenetics

example_zarr

example OME-ZARR

Jupyter Notebook

where_does_my_trash_need_to_go

Trash sorting guide

docker-galaxy-ploen

Special Galaxy Docker Image for the MPI for Evolutionary Biology

notebooks

📚 Collection of IPython notebooks

Jupyter Notebook

galaxy-rna-structural-analysis

Galaxy flavor for RNA structural analysis

ipython-galaxy-publication

Our initial proposal for a Docker/IPython/Galaxy paper

presentations

📚 talks, presentations and ideas

docker-odv

Docker image for ODV