Ben Cardoen (@bencardoen)
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bencardoen

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Top repositories

1

DataCurator.jl

A scalable Julia package to transparently validate and transform large biomedical datasets using human readable recipes that are translated to machine verifiable templates.
Julia
7
star
2

smlmvis

Superresolution visualization of 3D protein localization data from a range of microscopes
Jupyter Notebook
5
star
3

singularity_slurm_cuda

Example on how to get started with Singularity and CUDA on a SLURM cluster
Shell
4
star
4

SPECHT.jl

SPECHT is a Julia implementation of a contrastive weakly supervised object detection and identification method for fluorescence microscopy.
Julia
3
star
5

SubPrecisionContactDetection.jl

A Julia package to detect contacts below the precision of a superresolution microscope between 2 subcellular organelles in 2-channel superresolution (STED) microscopy.
Julia
2
star
6

imaris_reader

Jupyter Notebook
1
star
7

bhattacharyya_distance

Jupyter Notebook
1
star
8

TransformFileNames.jl

Recurse over a filesystem hierarchy and rename files and directories not matching user specified conditions.
Julia
1
star
9

singularity_julia

Template definition file for Singularity RO containers with Julia and user package embedded.
1
star
10

paper_reviews

Python
1
star
11

ERGO.jl

Object / density detection in astigmatic superresolution dSTORM microscopy
Jupyter Notebook
1
star