Discover @audy Open Source projects

Austin Richardson (@audy)

audy

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385
Global Rank 71,169 (Top 3 %)
Followers 343
Following 988
Registered almost 15 years ago
Most used languages

Python
34.3 %

Ruby
31.3 %

Shell
4.5 %

HTML
4.5 %

Jupyter Notebook
4.5 %

JavaScript
3.0 %

Makefile 3.0 %

R
3.0 %

Perl
3.0 %

Rust
1.5 %

AppleScript 1.5 %

Go
1.5 %

Vim Script
1.5 %

Dockerfile
1.5 %

C
1.5 %
Location 🇺🇸 United States
Country Total Rank 17,936
Country Ranking

AppleScript 98

Makefile 757

Dockerfile
974

Vim Script
1,340

Ruby
1,973

Perl
2,910

R
4,638

Python
5,555

Rust
9,416

domain-name-generator

generat.es clev.er sho.rt doma.in nam.es

bioinformatics-hacks

Scripts for miscelleneous bioinformatics tasks

catsay

🐱 💻 like cowsay but cats

stitch

Overlap assembler of paired-end DNA sequences generated by Illumina

memelicious

Parser of internet memes

smalldata

Small(-ish) datasets for fun and teaching

taxcollector

16S rRNA database

miseq-16S-pipeline

HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq

tbl2asn-forever

Use tbl2asn forever by pretending that it's still 2019

lederhosen

User-friendly tool to quickly go from 16S rRNA sequence data to an OTU matrix

make-rmarkdown

Make + RMarkdown for minimally replicable scientific computing.

evernote-git-backup

Automatically backup Evernote notes to HTML files and track using Git

dotflies

ncbi-taxonomy-bot

Bot that tweets when NCBI updates their taxonomy database

barcode-generator

Generate nucleotide sequences for multiplexed sequencing aka "barcoding" given some constraints.

esrapgra

The opposite of argparse

genome-explorer

🔬 Genome Browser for Bacteria

telegram-bot

🤖 ☎️ it's a me! telegram bot!

cram

Comparative, Rapid Analysis of Metagenomes

dna

A biological sequence file (fasta, fastq, qseq) parser for Ruby

craigslist-twitter-bot

Craigslist-scraping Twitter bot

downloads

💾 Happy file downloading for Python

bioinformatics

annotated list of bioinformatics tools I used

tree-of-life

🌳 API for NCBI taxonomic lineages

deskclean

Keep your ~/Desktop tidy!

media-recipes

food for microbes

vagrant-torque

Run a single machine torque cluster inside of a Vagrant VM.

presentations

My presentations and talks

docker-sciruby-notebook

SciRuby + IRuby notebook in a Docker container

poster-session-bootstrap

Create academic style posters by editing markdown files. Focus on content instead of layout.

C

I took this class and got a B

galaxy-illumina-16S

Ion Torrent 16S rRNA amplicon pipeline for Galaxy

tiny-tax

A small lib for names/nodes.dmp

R-IRC

The IRC line client protocol in R

pipet

Bioinformatics Database "Package Manager"

deutsch-bot

Ruby IRC bot to teach myself German

greenhouse-monitor

Code and specs for a remote, always-on (3G), temperature and humidity sensor running on a Raspberry Pi

Forage

grep for nucleotides

hiseq-16s-pipeline

Process Illumina 16S amplicons on the really big computer at the University of Florida

cd-hit-that

sqlalchemy-sandbox

Thing I made to get good at SQLAlchemy

wrapperer

A universal wrapper for command line programs in R

banana

A tool for handling multiplexed 454 and Illumina generated sequence data

klotzbot

IRC bot that logs

bitbars

my bitbar plugins

pass-app

A simple, web-based front-end for password-store

bio-dat

Examples/experiments of using dat with bioinformatics (sequence) data.

bart-analysis

🚉 Analyzing BART data

Jupyter Notebook

pangea

taxonomy-dependent short read 16S rRNA classifier

hdf5-dna

Examples and experiments of using HDF5 and h5py with biological sequence data

rrna_validation

Final Project for ZOO6927 - Methods of Phylogenetic Inference

Grape

Distributed BLAST

import-sequences

Horrifying hack for importing raw DNA sequencing reads into a standard format

tilde

things related to tilde.town

crosswords

📰 ☕ crossword puzzle generator

miniblast

The usual seed and extend search algorithm implemented in Ruby.

phylograph

Project for a class

python-science-skeleton

IPython data science project skeleton

berkeley-bowl-soups

Scraping and analyzing the daily soup offerings at Berkeley Bowl

falafel.space

🔨 A Minecaft Server

bio-xl

Tools for dealing with large (> memory) collections of nucleotide sequences

clump

Another class project

speck-notebook

so I can run speck on binder

Jupyter Notebook

Dockerfiles

@audy's dockerfiles

scratch

👾 I program my home computer

audy.github.io

learning-rust

pangea3

OTU clustering pipeline based on CLC Assembly Cell

audy

plottery

Procedurally Generated Pottery

Jupyter Notebook

miniblog

mini tiny bloggy thingy

sequence-storage

web app for managing lots of sequence data

self.check

Keep track of self-reported data about yourself.