Aaron Petkau (@apetkau)
github

apetkau

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  • Stars
    star
    157
  • Global Rank 148,587 (Top 6 %)
  • Followers 86
  • Following 29
  • Registered almost 15 years ago
  • Most used languages
    Nextflow     26.3 %
    Perl
         21.1 %
    Shell
         21.1 %
    Jupyter Notebook
         15.8 %
    C
         10.5 %
    Python
         5.3 %

Top repositories

1

orthomcl-pipeline

Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/
Perl
80
star
2

microbial-informatics-2014

Microbial Whole Genome Sequence data analysis labs for 2014
Shell
29
star
3

genomics-data-index

Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.
Python
12
star
4

galaxy-hackathon-2014

Shell
11
star
5

core-phylogenomics

Pipeline for identifying core SNPs and building a phylogenetic tree
Perl
4
star
6

nf-core-assemblyexample

Nextflow
3
star
7

snvphyl-validations

Scripts and steps taken for validation tests on SNVPhyl.
Perl
3
star
8

nf-core-genomicnomenclature

Nextflow
2
star
9

snvphyl-galaxy

Shell
2
star
10

nf-core-mlstprofiler

Nextflow
1
star
11

nf-core-pathoidentification

Nextflow
1
star
12

comp7944-project

Project on visualizing association rules extracted from covid-19 data.
Jupyter Notebook
1
star
13

assembly-nf

Nextflow
1
star
14

snvphyl-asm-ngs-2015

SNVPhyl ASM NGS 2015 software challenge results
1
star
15

ffp-3.19-custom

Modifications to http://sourceforge.net/projects/ffp-phylogeny/ 3.19.
C
1
star
16

phylip-custom

Customized phylip based on 3.695
C
1
star
17

core-phylogenomics-tutorial

A set of tutorials for the core phylogenomics pipeline.
Perl
1
star
18

assembly-galaxy

Shell
1
star
19

ggtree-tutorial

Jupyter Notebook
1
star
20

cardlive-presentation-2020

Jupyter Notebook
1
star