Fabrício Almeida-Silva (@almeidasilvaf)
github

almeidasilvaf

Twitter logo Share LinkedIn logo Share Facebook logo Share
  • Stars
    star
    101
  • Global Rank 206,374 (Top 8 %)
  • Followers 41
  • Registered almost 5 years ago
  • Most used languages
    R
         70.0 %
    JavaScript
         15.0 %
    HTML
         10.0 %
    TeX
         5.0 %
  • Location 🇧🇪 Belgium
  • Country Total Rank 4,104
  • Country Ranking
    R
         13
    TeX
         202
    HTML
         335
    JavaScript
         1,394

Top repositories

1

BioNERO

Easy and comprehensive biological network reconstruction and analysis
R
24
star
2

syntenet

An R package to infer and analyze synteny networks from protein sequences
R
21
star
3

HybridExpress

An R package for comparative transcriptomic analyses of hybrids and their progenitors
R
12
star
4

doubletrouble

An R package to identify and classify duplicated genes from whole-genome protein sequence data
R
11
star
5

cogeqc

An R package to perform systematic quality checks on comparative genomics analyses
R
8
star
6

doubletroubledb

A dashboard to explore and download the duplicated gene repertoire in eukaryote species
R
4
star
7

EuroBioc2022_synteny_networks

Material for the workshop "Inference and Analysis of Synteny Networks with syntenet", presented at EuroBioc2022
HTML
3
star
8

bears

An R package to create gene expression atlases from bulk RNA-seq data on NCBI SRA
R
3
star
9

CompEvoBio

Written materials for the course "Introduction to Computational Evolutionary Biology"
R
2
star
10

SoyFungi_GWAS_GCN

Data and code associated with the manuscript "Integration of genome-wide association studies and gene coexpression networks unveils promising soybean resistance genes against five common fungal pathogens"
R
2
star
11

cogeqc_paper

Data and code associated with the paper "Assessing the quality of comparative genomics data and results with the cogeqc R/Bioconductor package"
TeX
1
star
12

quarto_theme

Custom styling for my slide presentations with Quarto
HTML
1
star
13

cageminer

Candidate Gene Miner
R
1
star
14

SoybeanAtlas_issues

A repo to report issues on the Soybean Expression Atlas database.
1
star
15

SEA_paper

Code and data associated with the paper 'The Soybean Expression Atlas v2: a comprehensive database of over 5000 RNA-seq samples'
JavaScript
1
star
16

rnaseq_intro

Code handouts for the course "Introduction to RNA-seq analysis with R/Bioconductor"
R
1
star
17

magrene

Motif analysis in gene regulatory networks
R
1
star
18

polyploid_GRNs

Code and data associated with the manuscript "Whole-genome duplications and the long-term evolution of gene regulatory networks in angiosperms"
R
1
star
19

doubletrouble_paper

Code and data associated with the paper "doubletrouble: an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications"
R
1
star
20

almeidasilvaf.github.io

Personal website and blog
JavaScript
1
star
21

HybridExpress_paper

Data and code associated with the paper "HybridExpress: an R/Bioconductor package for comparative transcriptomic analyses of hybrids and their progenitors"
JavaScript
1
star