Discover @alistairewj Open Source projects

Alistair Johnson (@alistairewj)

alistairewj

Stars
580
Global Rank 50,838 (Top 2 %)
Followers 462
Registered almost 13 years ago
Most used languages

Jupyter Notebook
60.0 %

Python
16.0 %

MATLAB
12.0 %

HTML
8.0 %

TSQL 4.0 %

sepsis3-mimic

Evaluation of the Sepsis-3 guidelines in MIMIC-III

Jupyter Notebook

mimic-iv-aline-study

Replication of the arterial line study in MIMIC-IV

Jupyter Notebook

peak-detector

Multimodal peak detection using ECG, ABP, PPG or SV

mortality-prediction

Real time mortality prediction in the MIMIC-III database

Jupyter Notebook

reproducibility-mimic

Evaluating the reproducibility of mortality prediction studies in the MIMIC-III database

Jupyter Notebook

mechanical-power

Study on mechanical power in MIMIC-III and eICU-CRD

tree-prediction-tutorial

Tutorial on prediction with medical data using tree based models

Jupyter Notebook

challenge2012

Python code parsing data from PhysioNet Challenge 2012

Jupyter Notebook

icu-model-transfer

Evaluating methods to improve model transfer for intensive care unit models

Jupyter Notebook

bert-deid

deidentify patient notes using pre-trained BERT

pyroc

Calculate area under the ROC and p-values when comparing predictions

Jupyter Notebook

cvpr-2021-cxr-tutorial

Tutorial introducing chest x-rays and challenges in building deep learning models with them

Jupyter Notebook

model-perf-matlab

Calculate statistics evaluating the performance of binary or continuous predictions output from a model

mimic-analysis-template

A template for conducting an analysis in the MIMIC clinical databases

Jupyter Notebook

auroc-matlab

Code to calculate the AUROC in MATLAB

oasis

Code for calculating the Oxford Acute Severity of Illness Score

process-biases-in-mimic

Evaluating biases in the healthcare process which impact results

Jupyter Notebook

lecture-intro-to-nlp

Jupyter Notebook

icu-care-value

To evaluate the value provided by ICU care across a decade of MIMIC data

pao2-fio2-prediction

Predict the PaO2/FiO2 ratio from non-laboratory derived data

Jupyter Notebook

got-predictions

Making predictions about season 6 of Game of Thrones

Jupyter Notebook

alistairewj.github.io

Personal website built using Hugo and based off the hugo-academic theme

chexpert-labeler

CheXpert NLP tool to extract observations from radiology reports.

install-sqlite-manager

Quick tutorial on installing SQLite manager

bert-deid-models

Trained models for use with bert-deid package

aki-progression-prediction

Predict progression of AKI from stage 1 to stage 3 in hospitalized patients

Jupyter Notebook