Alistair Miles (@alimanfoo)
github

alimanfoo

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Top repositories

1

pysamstats

A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.
Python
185
star
2

csvvalidator

A small CSV validator library for Python.
Python
80
star
3

vcfnp

Load numpy arrays and HDF5 files from VCF (variant call format)
Python
31
star
4

zarrita

Python
16
star
5

numpydoc_decorator

Build numpy-style docstrings programmatically and apply them using a decorator.
Python
16
star
6

alimanfoo.github.io

Alistair Miles' blog
Jupyter Notebook
12
star
7

vcfplt

Convenient plotting functions for working with variant call data.
Python
3
star
8

anhima

Analyse genetic variation.
Python
3
star
9

ag1000g-phase2-data-paper

Repo for building a data descriptor paper for the Ag1000G phase 2 resource.
Jupyter Notebook
1
star
10

hmmcnv

Examples and utilities for calling copy number variations (CNVs) from high throughput sequence data using a hidden Markov model (HMM)
1
star
11

shiny-train

Jupyter Notebook
1
star
12

dphil

Genomic epidemiology of malaria vectors in the Anopheles gambiae species complex - Alistair Miles' PhD thesis
Jupyter Notebook
1
star
13

alimanfoo

My personal repo.
1
star