sars-cov-2-recovery

A user-friendly and sequencing platform-independent bioinformatics pipeline to build SARS-CoV-2 complete genomes from raw sequencing reads and to investigate variants. Integrated in a combined Galaxy and IRIDA infrastructure.

chewbbaca-galaxy

Galaxy wrapper for the chewBBACA BSR-Based Allele Calling Algorithm

phantastic-galaxy

An automated analysis pipeline PHANtAsTiC: Public Health Analysis of Nucleotides through Assembly, Typing and Clustering