AB (@a1ultima)
  • Stars
    star
    81
  • Global Rank 240,599 (Top 9 %)
  • Followers 26
  • Following 39
  • Registered over 10 years ago
  • Most used languages
    Python
    61.5 %
    C++
    15.4 %
    OpenEdge ABL
    15.4 %
    R
    7.7 %
  • Location 🇬🇧 United Kingdom
  • Country Total Rank 10,264
  • Country Ranking
    OpenEdge ABL
    3
    R
    871
    C++
    3,019
    Python
    4,585

Top repositories

1

hpcleap_dnds

Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioinformatics information available, then allow the user to compare selective pressures acting along the protein sequence vs. an overlay of functional protein domain annotations.
OpenEdge ABL
18
star
2

TelomereTimebomb

Python
5
star
3

kaks_error_bars

A simple script and example data file to draw barplots of multiple protein's pairwise dN/dS values, with error bars!
R
4
star
4

nonRedCRE_tested

Thoroughly tested prototype of multi-species, non-redundant, de novo CRE discovery pipeline. Publishable database and web-service in progress.
Python
3
star
5

learn_ML

Templates and Examples of Machine Learning programs. Topics covered in README.
Python
3
star
6

vbdev

OpenEdge ABL
3
star
7

argonLJMD

C++
3
star
8

HPCLEAP_SWE-MPI

Tsunami simulations in 3D (with 2D visual output showing +1D via colour).
3
star
9

vigilab_intergeneShareGFF

(1) Parse in a GFF file, (2) Filter only rows matching a specific type (e.g. transcript), (3) Then print a new GFF file whose "start" and "end" fields are expanded to include intergenic regions whose sharing distribution differs according to pairwise strand orientations: (i) 1/3:2/3 ratio for tail:head (+,+) strands, (ii) 2/3:1/3 for head:tail strands (-,-), and (iii) 1/2:1/2 for head:head (-,+) and tail:tail (+,-) strands
3
star
10

JustAGaan

Playing with AIs
2
star
11

hpcleap_obp

Python
2
star
12

hpcleap_gemm

2
star
13

hpcleap_malarVsNon

Python
2
star
14

T-SNE_testing

Testing dimensionality reduction techniques useful for VB Expression map, turning into a 1D indexable vector
Python
2
star
15

hpcleap_gpu

2
star
16

hpcleap_md

Molecular Dynamics simulation (HPC-LEAP workshop 1)
C++
2
star
17

hpcleap_ppi

Protein-protein interactions predicted between proteins of Anopheles gambiae, Plasmodium falciparum and between the proteins of the two species
Python
2
star
18

hpcleap_neuro

Neuroscience practical excercises in HPC-LEAP Thematic workshop: Computational Biology
2
star
19

SplinterBotPPI

Scrapes iPfam and Uniprot for co-complex protein-protein interactions in Anopheles gambiae and Plasmodium falciparum.
Python
2
star
20

lilGoth_data

1
star