Shen Lab at Texas A&M University (@Shen-Lab)
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Shen-Lab

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  • Stars
    star
    1,049
  • Global Rank 29,166 (Top 2 %)
  • Followers 101
  • Registered about 8 years ago
  • Most used languages
    Python
         77.8 %
    C++
         11.1 %
    Roff     5.6 %
    HTML
         5.6 %

Top repositories

1

GraphCL

[NeurIPS 2020] "Graph Contrastive Learning with Augmentations" by Yuning You, Tianlong Chen, Yongduo Sui, Ting Chen, Zhangyang Wang, Yang Shen
Python
548
star
2

DeepAffinity

Protein-compound affinity prediction through unified RNN-CNN
Python
136
star
3

GraphCL_Automated

[ICML 2021] "Graph Contrastive Learning Automated" by Yuning You, Tianlong Chen, Yang Shen, Zhangyang Wang; [WSDM 2022] "Bringing Your Own View: Graph Contrastive Learning without Prefabricated Data Augmentations" by Yuning You, Tianlong Chen, Zhangyang Wang, Yang Shen
Python
108
star
4

SS-GCNs

[ICML 2020] "When Does Self-Supervision Help Graph Convolutional Networks?" by Yuning You, Tianlong Chen, Zhangyang Wang, Yang Shen
Python
107
star
5

gcWGAN

Guided Conditional Wasserstein GAN for De Novo Protein Design
Roff
37
star
6

TALE

Transformer-based protein function Annotation with joint feature-Label Embedding
Python
31
star
7

LDM-3DG

[ICLR 2024] "Latent 3D Graph Diffusion" by Yuning You, Ruida Zhou, Jiwoong Park, Haotian Xu, Chao Tian, Zhangyang Wang, Yang Shen
Python
30
star
8

Drug-Combo-Generator

Deep Generative Models for Drug Combination (Graph Set) Generation given Hierarchical Disease Network Embedding
Python
29
star
9

GDA-SpecReg

[ICLR 2023] "Graph Domain Adaptation via Theory-Grounded Spectral Regularization" by Yuning You, Tianlong Chen, Zhangyang Wang, Yang Shen
Python
22
star
10

LOIS

[NeurIPS 2019] LOIS: Learning to Optimize In Swarms, guided by posterior estimation
C++
17
star
11

BAL

Bayesian Active Learning for Optimization and Uncertainty Quantification with Applications to Protein Docking
C++
13
star
12

CPAC

[Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction
Python
13
star
13

EGCN

Energy-based Graph Convolutional Networks for Scoring Protein Docking Models
Python
11
star
14

Bayesian-L2O

[ICLR 2022] "Bayesian Modeling and Uncertainty Quantification for Learning to Optimize: What, Why, and How" by Yuning You, Yue Cao, Tianlong Chen, Zhangyang Wang, Yang Shen
Python
10
star
15

ncVarPred-1D3D

Multimodal learning of noncoding variant effects using genome sequence and chromatin structure
Python
4
star
16

Signals-and-Systems

Signals and Systems Honors Projects
4
star
17

WSR-PredictPofPathogenicity

A weakly supervised regression approach to directly predict the probability of pathogenicity based on categorized pathogenicity classes
Python
4
star
18

cNMA

Encounter Complex-based Normal Mode Analysis for Proteins
Python
4
star
19

Shen-Lab.github.io

HTML
2
star
20

Rev_scripts_MutEffect

1
star