Discover @SamStudio8 Open Source projects

Sam Nicholls (@SamStudio8)

SamStudio8

Stars
343
Global Rank 79,906 (Top 3 %)
Followers 191
Following 52
Registered about 13 years ago
Most used languages

Python
68.8 %

C++
6.3 %

JavaScript
6.3 %

Fortran
3.1 %

Vim Script
3.1 %

Nextflow 3.1 %

Perl
3.1 %

CSS
3.1 %

Dockerfile
3.1 %
Location 🇬🇧 United Kingdom
Country Total Rank 3,797
Country Ranking

Nextflow 34

Fortran
259

Perl
671

Python
684

Dockerfile
831

Vim Script
955

C++
3,020

CSS
3,982

reticulatus

A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads

chitin

chitin: an awful shell for awful bioinformaticians

majora2

Malleable All-seeing Journal Of Research Artifacts

naaaavi

Naming avoiding ambiguity automatically assigning valid identifiers

gretel

An algorithm for recovering haplotypes from metagenomes

hansel

A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence

goldilocks

Locating genetic regions that are "just right"

dehumanizer

rapidly rid reads of horrid humans

elan-nextflow

for data flowing to birmingham

ocarina2

on-computer agent (for) remembering input actions

book-notes

ffurf

a very simple python package for defining and filling configurations

triage

A todo manager for the disaster that is your day

hootsim

Extensible agent-based model simulator written in C++

elan-ena-nextflow

dbot-stats

Statistics module for award winning depressionbot

gretel-test

assert-changelog

sunblock

Do not stare directly into the Sun Grid Engine

frontier-dissertation

Undergraduate Dissertation Project

IYG-Web

"Inside Your Genome" Web App

hootsim2000

A sequel to the extensible agent event based simulator, Hootsim

IYG-Import

Python Data Importer for IYG Web

Mountain

A work in progress collection of simple but possibly useful genetics tools.

2018-01-23-samstudio8

pyena

a hilariously simple script to send raw reads to ena

reticulatus-containers

a box to put snakes in

frontier

Interfaces for the reading, storage and retrieval of large machine learning data sets for use with scikit-learn

samstudio8.github.io.off

samstudio8.github.io

EulerFortran

First foray in to Fortran

IYG-Web-Lib

Perl Library for IYG Web

swell

dotfiles-2.0

Things I need on my adventures against computers, deployed in a better way than last time