Discover @Robaina Open Source projects

Semidán Robaina (@Robaina)

Robaina

Stars
60
Global Rank 300,258 (Top 11 %)
Followers 29
Following 51
Registered about 8 years ago
Most used languages

Python
52.9 %

JavaScript
23.5 %

PHP
5.9 %

HTML
5.9 %

Jupyter Notebook
5.9 %

MATLAB
5.9 %
Location <UNKNOWN>
Country Total Rank 1,008

BRENDApyrser

A Python parser for the BRENDA database

Pynteny

Query sequence database by HMMs arranged in predefined synteny structure

GenBankpy

Tools to download, parse and filter GenBank files

Netflowpy

A python tool to optimize chemical concentration trajectories in network-based chemical systems

filterSAM

Tools to filter SAM/BAM files by percent identity and percent of matched sequence

PlosComp2017

Supplementary Information

parallelBAM

Tools to parallelize operations on large BAM files

Jplaceparser

A python parser for jplace (evolutionary placement) files

pathwayEnrichment

Tools to perform a permutation-based cell pathway analysis

fluxOrders

GitHub repository of the article: Flux-based hierarchical organization of Escherichia coli's metabolic network

googleTrends

A visualization of current google trends on a world map using WebGL Earth

modeloEEI

Modelo aplicación web para la enseñanza en secundaria de las Especies Exóticas Invasoras

MetaTag

metaTag: functional and taxonomical annotation of metagenomes through phylogenetic tree placement

VenusPentagram

A depiction of the Venus Pentagram

oil_spill_example

Jupyter Notebook

cayley-dickson-calculator

A calculator to operate on Cayley-Dickson Algebras written in JavaScript

Clinker_Server

Set clinker to be run remotely from a server