James Ferguson (@Psy-Fer)
github

Psy-Fer

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Top repositories

1

SquiggleKit

SquiggleKit: A toolkit for manipulating nanopore signal data
Python
121
star
2

deeplexicon

Signal based nanopore RNA demultiplexing with convolutional neural networks
Jupyter Notebook
34
star
3

buttery-eel

The buttery eel - a slow5 guppy/dorado basecaller wrapper
Shell
34
star
4

interARTIC

InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..
CSS
29
star
5

blue-crab

crab go snap snap
Python
28
star
6

fast5_fetcher

A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing efficiency
Python
14
star
7

SARS-CoV-2_GTG

Genomic Tech's COVID sequencing
Python
10
star
8

nanopore_formats

A place to track nanopore formats
8
star
9

nanopore_NCM18

Helpful scripts for working with Oxford Nanopore Sequencing data
8
star
10

CoVarPlot

CoVarPlot - Covarage Variant Plots for viral whole genome sequencing
Python
7
star
11

misc

Various scripts and how-to's related to bioinformatics, genomics, and nanopore sequencing
Python
3
star
12

bioinf_tools

Quick and dirty scripts used in my bioinformatics adventures
Python
3
star