Anand Mayakonda (@PoisonAlien)
github

PoisonAlien

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  • Stars
    star
    797
  • Global Rank 38,020 (Top 2 %)
  • Followers 188
  • Following 15
  • Registered over 10 years ago
  • Most used languages
    R
         44.4 %
    Python
         16.7 %
    C
         11.1 %
    Shell
         11.1 %
    HTML
         5.6 %
    Julia
         5.6 %
    Ruby
         5.6 %
  • Location πŸ‡©πŸ‡ͺ Germany
  • Country Total Rank 2,282
  • Country Ranking
    R
         13
    Julia
         159
    C
         1,239
    Shell
         3,093
    Ruby
         3,124
    Python
         5,940
    HTML
         6,780

Top repositories

1

maftools

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
R
437
star
2

trackplot

Generate IGV style locus tracks from bigWig files in R
R
129
star
3

TCGAmutations

R data package for pre-compiled somatic mutations from TCGA cohorts (from Broad Firehose and TCGA MC3 Project)
R
82
star
4

basegraphics

Pretty plots using pure base graphics in R
R
78
star
5

somaticfreq

knowledge-based genotyping of cancer hotspots from the tumor BAM files
C
19
star
6

beadAnalyze

Automated differential expression analysis for Illumina beadarrays (HT12 V4 arrays).
R
8
star
7

varscan_accessories

accessory scripts for processing varscan somatic/copynumber outputs.
Python
8
star
8

gtf2fasta

Tookit for gtf format conversion and sequence extraction
Julia
5
star
9

basecounts

A tool to extract ATGC/Indel read counts at user specific loci from BAM files
C
5
star
10

chiptk

optimized protocol for processing 50-bp SE ChIP-seq
Shell
4
star
11

annovar2maf

Tiny python script to generate MAF files from output generated by standard annotation programs
Python
4
star
12

COVID_rXiv

code for Visualizing COVID19 metadata from public sources
R
3
star
13

callpeaks

Bash script to call peaks from MACS2 peak caller
Shell
2
star
14

somatic_pipeline

Python
2
star
15

flatuicoloRs

Color palettes from https://flatuicolors.com/ in R
R
1
star
16

PoisonAlien.github.io

https://poisonalien.github.io/
Ruby
1
star
17

supplementary_code

HTML
1
star
18

squaRify

Minimal, zero dependancy package for drawing treemaps in R
R
1
star