Discover @PedroBarbosa Open Source projects

Pedro (@PedroBarbosa)

PedroBarbosa

Stars
20
Global Rank 640,821 (Top 23 %)
Followers 17
Following 20
Registered over 11 years ago
Most used languages

Jupyter Notebook
40.0 %

Python
40.0 %

HTML
20.0 %
Location 🇵🇹 Portugal
Country Total Rank 2,536
Country Ranking

Jupyter Notebook
113

Python
601

HTML
1,107

VETA

VETA - A simple tool do evaluate variant predictors

paper_HCM_benchmark

This repo contains the code to reproduce the results obtained in the benchmark of prediction tools to predict Hypertrophic Cardiomyopathy associated variants

Jupyter Notebook

deep_intronic_variants

This is a repository with a set of manually curated intronic variants causing human diseases.

DeepIntronic_Benchmark

Repo that contains the data and code to reproduce the evaluation of computational methods to predict deep intronic variation.

Prepare_SplicingPredictors

Set of scripts to prepare the input to run several splicing-related tools from VCF files

Synthetic_datasets_generation

Code to reproduce the results from the GECCO'24 paper on generating synthetic datasets in genomicsned in the benchmark of prediction tools to predict Hypertrophic Cardiomyopathy associated variants

Jupyter Notebook