Matt Olm (@MrOlm)
github

MrOlm

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  • Stars
    star
    334
  • Global Rank 81,189 (Top 3 %)
  • Followers 66
  • Following 6
  • Registered about 9 years ago
  • Most used languages
    Python
         55.6 %
    Jupyter Notebook
         33.3 %
    Nextflow     11.1 %
  • Location 🇺🇸 United States
  • Country Total Rank 19,828
  • Country Ranking
    Nextflow     95
    Python
         3,927
    Jupyter Notebook
         4,730

Top repositories

1

drep

Rapid comparison and dereplication of genomes
Python
188
star
2

inStrain

Bioinformatics program inStrain
Python
98
star
3

covid19_population_genomics

Analysis of the population diversity of SARS-CoV-2 within and between individual patients
Jupyter Notebook
15
star
4

pipeCoverage

Quickly calculate coverage of sequences in a .sam file while retaining breadth information
Python
8
star
5

tRep

Quickly get the taxonomy of a genome
Python
8
star
6

bacterialEvolutionMetrics

Scripts in support of publication
Jupyter Notebook
7
star
7

drep_instrain_tutorial

Tutorial for dRep and inStrain. Made for EBAME7
4
star
8

InfantEukaryotes

Notebooks supporting the publication "Strain-level overlap between infant and hospital fungal microbiomes revealed through de novo assembly of eukaryotic genomes from metagenomes"
Jupyter Notebook
2
star
9

glrestore

Easily restore objects from AWS glacier from the command line using python
Python
1
star
10

nf-genomeresolvedmetagenomics

A nextflow pipeline to perform genome resolved metagenomics
Nextflow
1
star