Mike Axtell (@MikeAxtell)
github

MikeAxtell

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  • Stars
    star
    152
  • Global Rank 149,256 (Top 6 %)
  • Followers 61
  • Following 3
  • Registered over 10 years ago
  • Most used languages
    Perl
         50.0 %
    Python
         33.3 %
    R
         16.7 %
  • Location πŸ‡ΊπŸ‡Έ United States
  • Country Total Rank 34,567
  • Country Ranking
    Perl
         334
    R
         3,315
    Python
         9,020

Top repositories

1

ShortStack

ShortStack: Comprehensive annotation and quantification of small RNA genes
Python
89
star
2

bam2wig

Conversion of a BAM alignment to wiggle and bigwig coverage files, with flexible reporting options
Perl
16
star
3

CleaveLand4

CleaveLand4: Analysis of degradome data to find sliced miRNA and siRNA targets
Perl
16
star
4

strucVis

Colorful display of small RNA depth of coverage on a predicted RNA secondary structure
Perl
7
star
5

butter

butter: Bowtie UTilizing iTerative placEment of Repetitive small rnas
Perl
7
star
6

sRNA_Viewer

Tools for visualizing plant sRNA-seq alignments, emphasizing RNA sizes
R
4
star
7

StepOnePlus

A shiny app to analyze real-time PCR data from the ABI StepOnePlus instrument / software
R
2
star
8

gsat

General Small RNA-seq Analysis Tool
Python
2
star
9

GSTAr

GSTAr: Generic Small RNA-Transcriptome Aligner
Perl
1
star
10

sim_srna-seq

Simulation of plant small RNA-seq data
Perl
1
star
11

size_dist

Python
1
star
12

ShortTracks

Useful length- and strand-based coverage files (bigwig) from small RNA-seq alignments (BAM)
Python
1
star