Felix Krueger (@FelixKrueger)
github

FelixKrueger

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  • Stars
    star
    824
  • Global Rank 35,974 (Top 2 %)
  • Followers 205
  • Following 4
  • Registered over 10 years ago
  • Most used languages
    Perl
         60.0 %
    Python
         20.0 %
    HTML
         10.0 %
    LilyPond     10.0 %
  • Location 🇬🇧 United Kingdom
  • Country Total Rank 1,780
  • Country Ranking
    LilyPond     4
    Perl
         6
    HTML
         103

Top repositories

1

TrimGalore

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
Perl
405
star
2

Bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states
HTML
357
star
3

SNPsplit

Allele-specific alignment sorting
Perl
44
star
4

Sherman

A simple Bisulfite FastQ Read Simulator (BiQRS)
Perl
10
star
5

Umi-Grinder

The use of UMIs for sequencing becomes more and more frequently used so we need to take them into consideration when deduplicating data aligning to the same positions
Perl
6
star
6

reStrainingOrder

A little QC tool that attempts to predict the genotype of mouse samples used, based on prior knowledge of high-quality SNPs from the Mouse Genomes Project
LilyPond
3
star
7

scRepeats

Custom script(s) for the processing of files for single-cell repeat analysis
Perl
2
star
8

IMPLICON

A processing guide for IMPLICON data (bisulfite amplicon data for imprinted loci)
Python
2
star
9

BabrahamLinkON

Pipeline for processing VDJ-Seq data
Perl
1
star
10

TrAEL-seq

A collection of software used for the TrAEL-seq manuscript
Python
1
star