Discover @AndrewGYork Open Source projects

Andrew York (@AndrewGYork)

AndrewGYork

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Global Rank 120,681 (Top 5 %)
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Registered over 9 years ago
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Python
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Location 🇺🇸 United States
Country Total Rank 29,649
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HTML
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Python
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publication_template

A template for writing scientific papers. View it in action here: https://andrewgyork.github.io/publication_template/

tools

Things we use regularly

high_na_single_objective_lightsheet

Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/high_na_single_objective_lightsheet

simple_sim_fusion_demo

Simple demo of structured illumination microscopy image fusion via Richardson-Lucy deconvolution

gfp_magnetofluorescence

A scientific publication that describes a simple, nontoxic, biocompatible way to control the brightness of fluorescent proteins via modest magnetic fields (~10 mT).

remote_refocus

A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/remote_refocus/

adaptive_interference_inference

A mathematical optimization problem, inspired by an apparent paradox in the physics of optical measurement. Read the micro-publication here: https://andrewgyork.github.io/adaptive_interference_inference

relaxation_sensors

A scientific publication that describes a new approach for quantitative readout of fluorescent biosensors, based on spontaneous isomerization rates. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/relaxation_sensors

stimulated_emission_imaging

A scientific publication that describes experiments to explore whether stimulated emission from a pointlike emitter is distinguishable from the stimulating beam. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/stimulated_emission_imaging

iterative-fusion

Automatically exported from code.google.com/p/iterative-fusion

rescan_line_sted

A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/rescan_line_sted

tumbling_is_general

A scientific publication that describes new approaches to measuring protein-protein interactions via molecular tumbling. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/tumbling_is_general/

msim

Automatically exported from code.google.com/p/msim

snoutscope

picoquant_spike_question

split_wrmscarlet

A scientific publication that describes a new red fluorophore, along with a set of strains, reagents and protocols, to make it faster and easier to label endogenous C. elegans proteins with fluorescent tags. Read the publication here: https://andrewgyork.github.io/split_wrmscarlet