Adam Taranto (@Adamtaranto)
github

Adamtaranto

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  • Stars
    star
    49
  • Global Rank 346,182 (Top 12 %)
  • Followers 44
  • Following 40
  • Registered over 12 years ago
  • Most used languages
    Python
         85.7 %
    Perl
         14.3 %
  • Location πŸ‡¦πŸ‡Ί Australia
  • Country Total Rank 5,173
  • Country Ranking
    Perl
         136
    Python
         672

Top repositories

1

teloclip

A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
Python
33
star
2

TRF2GFF

Convert Tandem Repeat Finder dat file output into gff3 format
Python
11
star
3

Corset-tools

Companion scripts for annotation of Corset generated transcript clusters.
Python
6
star
4

blast-besties

Rapid discovery of reciprocal best blast pairs.
Python
6
star
5

TIRmite

Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
Python
4
star
6

MITE_Hunter_2

Minor edits to allow MITE_Hunter (Han & Wessler 2010) to use modern blast+
Perl
2
star
7

frisk

Screen genomic scaffolds for regions of unusual k-mer composition.
Python
2
star
8

LTR-Harvest-Reformat

Correct sequence names in LTR_Harvest GFF3 output.
Python
2
star
9

subset-fasta-by-name

Subset, split, and correct formatting of multiple sequence FASTA files.
Python
1
star
10

density-Mapr

An R workflow for creating heat-maps representing the spatial association between two genomic feature sets
Perl
1
star
11

mimeo

Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
Python
1
star
12

HowToScience

A knowledge engine for new students of bioinformatics.
Python
1
star
13

TE-splitter

Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons.
Python
1
star
14

TE-insertion-scanner

Scan whole genome alignments for signatures of transposon insertion.
Python
1
star