Discover zelenkastiot/s-gene-mutations-SARS-CoV-2 Open Source project

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Jupyter Notebook
License
MIT License
Created almost 4 years ago
Updated about 2 years ago

zelenkastiot

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Processing GISAID SARS-CoV-2 emerging variants data and generating a language model using Transformers. The model semantically captures masked glycoprotein amino acid mutations in emerging variants of the SARS-CoV2-virus and gives appropriate scores for each potential aa change.

PhaseUnwrapping_book

A Jupyter Book (v0.6.4) that contains figures for the Phase-unwrapping research paper (written in Julia). First author Nan-kuei Chen and second author Pei-Hsin Wu, report a new postprocessing procedure that uses Fourier‐domain data analyses to improve the accuracy and reliability of phase unwrapping for MRI data of low SNR.

HTML

brownian

Project funded by DFG. A jupyter-book that explores mearly a chunk of the field of nonlinear dynamics, specifically diffusion and random search in heterogeneous media. The book has various simulations for the stochastic process known as Brownian motion. The motion dynamics are simulated by solving the Langevin equation numerically for the different initial parameters. After an ensemble finishes, the trajectories of Brownian particles together with the probability density function and the mean square displacement are plotted. The book has chapters on Brownian search, Backbone problems, and Stochastic resetting.

Jupyter Notebook

julia1.4.1-docker-test

Playground Docker environment for running Script of Scripts Jupyter notebooks (Julia v.1.4.1 + R + Python3+Plotly) + GitHub actions automatic Binder build

Jupyter Notebook

RiemannGarbageBin

Student paper "Riemann Garbage Bin: A Self-sustained Waste Management System" [CIIT, 2018]