zcrabbit/vbpi-torch

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zcrabbit/vbpi-torch

zcrabbit

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Pytorch Implementation of Variational Bayesian Phylogenetic Inference

PhyloInfer

Developing efficient Bayesian phylogenetic inference methods

sbn

Generalizing Phylogenetic Posterior Estimator from MCMC samples via subplit Bayesian networks

Jupyter Notebook

vbpi-gnn

Code for learnable topological features for phylogenetic inference via graph neural networks

vbpi-nf

Code for improved variational Bayesian phylogenetic inference with normalizing flows

RNSHMC

Hamiltonian Monte Carlo Acceleration using Surrogate Functions with Random Bases

zcrabbit.github.io

Personal Homepage

vbpi

Variational Bayesian Phylogenetic Inference