yu-lab-vt/NIS3D

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MATLAB
License
MIT License
Created about 1 year ago
Updated 6 months ago

yu-lab-vt/NIS3D

yu-lab-vt

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A Completely Annotated Benchmark for Dense 3D Nuclei Image Segmentation

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An exact and efficient min-cost flow algorithm for data-association in multi-object tracking

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An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data

CINDA

Circulation Network based Data-association for Multi-object Tracking

SynQuant

A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.

AQuA2

Activity Quantification and Analysis for molecular spatiotemporal signals

ConvexVST

A Convex Optimization Approach to Variance-stabilizing Transformation

BILCO

BIdirectional pushing with Linear Component Operations, an efficient algorithm for solving joint alignment problem

PrinCut-Auto

an unsupervised automatic 3D cell detector and manual annotation assistant

CMC

A Conditional Multifactorial Contingency (CMC) model to jointly learn the multifactorial effect in large-scale data.

Whole-VNC-Imaging-Analysis

A whole-VNC functional imaging data analysis framework