yjcyxky/omics-tools

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Created almost 4 years ago
Updated over 3 years ago

yjcyxky/omics-tools

yjcyxky

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A suite of programs for interacting with high-throughput sequencing data.

antibody-dl

A Collection of Platform, Tools, and Resources for Antibody Engineering

choppy-pipe

An integrated analysis platform for efficiently achieving computational reproducibility

chat-publications

Ask questions and get answers from publications

biomedgps

A knowledge graph system with graph neural network for drug discovery, disease mechanism and biomarker screening.

fs.ossfs

AliCloud OSS filesystem for PyFilesystem2

minio-clj

Clojure Wrapper around Minio-java client

biomedgps-data

Biomedical knowledge graph & graph neural network models for drug repurposing.

Jupyter Notebook

ossutil-github-action

GitHub actions for aliyun ossutil.

rcore-tutorial-v3

rCore-Tutorial-v3开发环境

clj-filesystem

An unified sdk for several object storage system.

ask-chatgpt

Get answers from chatgpt by using selenium.

cookiecutter-pypackage

Cookiecutter template for a Python package

text2knowledge

Extract entities and relationships from biomedical text and build a knowledge graph.

Jupyter Notebook

preqc-pack

To generate the required pre-evaluation indicators at one time...

ossutil-github-action-js

A JavaScript action for ossutil.

biopoem

Biopoem for DAG Task with Large-scale Servers.

oss-clj

Clojure Wrapper around oss-java client

cgdspy

Python based API for accessing the Cancer Genomics Data Server (CGDS).

cgdsclj

Clojure based API for accessing the Cancer Genomics Data Server (CGDS).

cluster-deployer

Cluster Deployer for deploying HPC cluster.

datascience-stacks

cluster-utils

The Choppy Cluster Utilities are the basic file, shell and text manipulation utilities of the GNU operating system and HPC Cluster. These are the cluster utilities which are expected to exist on every operating system or HPC Cluster.

metadata-tool

For Metadata QC & QA.

rapex

RAPEX - Response to Air Pollution EXposure

remote-fs

File system utilities for object store in clojure.

cljs-template

A project template for ClojureScript & Tauri.

ontology-matcher

It's a simple ontology matcher for building a set of cleaned ontologies. [For BioMedGPS project]

local-fs

File system utilities in clojure.

biodata-validator

A set of specs for biomedical metadata

coql

A Clojure library designed to turn query json into SQL.

bioinformatics-algorithms

Rosalind | Problems

biomedgps-studio

[Frontend] A knowledge graph system with graph neural network for drug discovery, disease mechanism and biomarker screening.

yjcyxky

data-model-viewer

A viewer for data dictionary based on Windmill.

notify-api

Notify someone with something by email, dingtalk etc.

biomedical-knowledgebases

A collection of biomedical knowledgebases, ontologies, and datasets.

biominer-indexd

Index Engine for Omics Data Files.

gliomarker

GlioMarker is the first diagnostic biomarker database in the field of gliomas to provide biomarker knowledge exploration, including comprehensive literature mining, ontology annotations, precision medical knowledge exploration, and omics data online analysis.

prophet-studio

A labeling tool for building your own domain knowledgebase from biomedical publications. Let us read the papers routinely and build our own domain knowledgebase together.

knowledge-graph-editor

This extension is designed for synchronizing findings/knowledges into a biomedgps instance. The findings/knowledges are annotated from literature and other sources using Label Studio.

tservice-core

A plugin system for managing several types of plugins, such as deploying http/async/dag task.