wyp1125/SeqEnhDL wyp1125/SeqEnhDL

  • Stars
    star
    3
  • Rank 3,963,521 (Top 79 %)
  • Language
    Python
  • Created about 6 years ago
  • Updated over 4 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
wyp1125/SeqEnhDL
github

wyp1125

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Multiple machine learning and deep learning models for sequence-based enhancer prediction

More Repositories

1

MCScanX

MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
CAP CDS
228
star
2

SAS-Clinical-Trials-Toolkit

SAS scripts for clinical trials applications including generating SDTM domains, ADaM datasets, and Define.xml files
SAS
90
star
3

MCScanX-transposed

Source code for my Bioinformatics paper "MCScanX-transposed: detecting transposed gene duplications based on multiple colinearity scans".
C++
6
star
4

SAS-Biostat-Tools

SAS scripts for various biostatistics applications. A complete pipeline for analyzing microarray data using linear models is included.
SAS
4
star
5

PHP-Market-Data-Visualization

PHP codes to visualize realtime stock data via candlestick and RSI chart.
PHP
3
star
6

DNN-Precision-Medicine

Deep neural network (DNN) models for a precision medicine problem using Python and TensorFlow.
Python
3
star
7

Biostatistics

R programs for biostatistics models and TLF
R
3
star
8

compute-grs

A small Perl script for computing genetic risk scores for obesity from a VCF file
Perl
3
star
9

AntEpiSeeker

A C++ tool for detecting epistatic interactions for case-control studies using a two-stage ant colony optimization algorithm
C++
3
star
10

Sklearn-Bank-Marketing

Build multiple machine learning models (Nearest Neighbors, SVMs, Decision Tree, Random Forest, Naive Bayes, etc.) for bank marketing data using sklearn and pandas.
Python
2
star
11

AntEpiSeeker2

Extended AntEpiSeeker algorithm relating epistasis detection to biological pathway analysis using ant colony optimization
C++
2
star
12

LSOSS

An R package for detection of cancer outlier differential gene expression
R
1
star
13

additive_epistasis

Collection of R, Python, Perl and Tensorflow programs to simulate and detect the additive epistasis genetic model
R
1
star
14

NGS_Pipeline_Utilities

A python toolkit to facilitate development, regression testing and deployment of NGS pipelines
Python
1
star