willtownes/nsf-paper

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willtownes/nsf-paper

willtownes

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Nonnegative spatial factorization for multivariate count data

glmpca

scrna2019

supporting code for the multinomial single cell RNA-Seq paper

glmpca-py

generalized principal component analysis (GLM-PCA) implemented in python

quminorm

Turning the quasi-UMI method into a bioconductor package

spatial-factorization-py

Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.

quminorm-paper

supporting code for the quasi-UMIs single-cell RNA-seq paper

vamf-paper

supporting code for the Varying-Censoring Aware Matrix Factorization paper

mit6882

Course Project for MIT 6.882- Bayesian Modeling

vamf

Varying-Censoring Aware Matrix Factorization R package

filibot

A website about Filipino Botany

stan

practicing with stan

edward

Sandbox for experimenting with the Edward probabilistic modeling framework in python.

Jupyter Notebook

python

Miscellaneous Python stuff I am working on

optimization-practice

sandbox for practice implementing optimization algorithms

patel2014gliohuman

A Bioconductor "Summarized Experiment" from the Patel et al. (2014) paper that performed single cell RNA-Seq analysis on human glioblastoma tissue.