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NanoPlot
Plotting scripts for long read sequencing datananopack
An overview of all nanopack toolsnanofilt
Filtering and trimming of long read sequencing datachopper
cramino
A *fast* tool for BAM/CRAM quality evaluation, intended for long readsnanocomp
Comparison of multiple long read datasetsnanostat
Create statistic summary of an Oxford Nanopore read datasetnanoQC
Quality control tools for nanopore sequencing datamethplotlib
Plotting tools for nanopore methylation datanano-snakemake
A snakemake pipeline for SV analysis from nanopore genome sequencingnanolyse
Remove lambda phage reads from a fastq filesurpyvor
A python wrapper around SURVIVORkyber
DEA.R
Script to automate differential expression analysis using DESeq2, edgeR or limma-voomphasius
nanoget
Functions to extract information from Oxford Nanopore sequencing data and alignmentsnanomath
A few simple math function for other Oxford Nanopore processing scriptsPromisingPreprint
A python twitter bot tweeting about preprints reaching an interesting altmetric scoreSTRdust
Tandem repeat genotyping from long readsenrichr_cli
Python script to use enrichr from command line (http://amp.pharm.mssm.edu/Enrichr/)make_arrow
A Rust tool to create an arrow file from a cram/bam filepathSTR
Repository with code for the analysis of pathogenic STRs in the 1000G ONT resequencing dataread_length_SV_discovery
nanoplotter
Plotting functions of Oxford Nanopore sequencing datafast5purge
Purge a fast5 file from sensitive informationtool-packaging
Some notes on how to make a pypi packageGermlineCNVCaller
Testing the GATK4.beta.5 GermlineCNVCallernanosplit
Splitting Oxford Nanopore data in a fail and pass dataset using a user defined quality cutoffdetermine-gender
Scripts to determine the gender of samples in exome and transcriptome sequencingcombine_images
Bit of Python code to resize and combine imagesLove Open Source and this site? Check out how you can help us