• Stars
    star
    28
  • Rank 882,216 (Top 18 %)
  • Language
    Python
  • License
    GNU General Publi...
  • Created about 7 years ago
  • Updated almost 2 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Remove lambda phage reads from a fastq file

More Repositories

1

NanoPlot

Plotting scripts for long read sequencing data
Python
430
star
2

nanopack

An overview of all nanopack tools
Python
210
star
3

nanofilt

Filtering and trimming of long read sequencing data
Python
189
star
4

chopper

Rust
150
star
5

cramino

A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
Rust
127
star
6

nanocomp

Comparison of multiple long read datasets
Python
103
star
7

nanostat

Create statistic summary of an Oxford Nanopore read dataset
Python
92
star
8

nanoQC

Quality control tools for nanopore sequencing data
Python
91
star
9

methplotlib

Plotting tools for nanopore methylation data
Python
90
star
10

nano-snakemake

A snakemake pipeline for SV analysis from nanopore genome sequencing
Python
51
star
11

surpyvor

A python wrapper around SURVIVOR
Python
19
star
12

kyber

Rust
17
star
13

DEA.R

Script to automate differential expression analysis using DESeq2, edgeR or limma-voom
R
17
star
14

phasius

Rust
13
star
15

nanoget

Functions to extract information from Oxford Nanopore sequencing data and alignments
Python
11
star
16

nanomath

A few simple math function for other Oxford Nanopore processing scripts
Python
9
star
17

PromisingPreprint

A python twitter bot tweeting about preprints reaching an interesting altmetric score
Python
8
star
18

STRdust

Tandem repeat genotyping from long reads
Rust
8
star
19

enrichr_cli

Python script to use enrichr from command line (http://amp.pharm.mssm.edu/Enrichr/)
Python
7
star
20

nanotest

Small test datasets for testing nanopack scripts and modules
Shell
5
star
21

make_arrow

A Rust tool to create an arrow file from a cram/bam file
Rust
4
star
22

pathSTR

Repository with code for the analysis of pathogenic STRs in the 1000G ONT resequencing data
Jupyter Notebook
4
star
23

read_length_SV_discovery

Jupyter Notebook
3
star
24

nanoplotter

Plotting functions of Oxford Nanopore sequencing data
Python
2
star
25

fast5purge

Purge a fast5 file from sensitive information
Python
2
star
26

tool-packaging

Some notes on how to make a pypi package
Python
1
star
27

GermlineCNVCaller

Testing the GATK4.beta.5 GermlineCNVCaller
Python
1
star
28

nanosplit

Splitting Oxford Nanopore data in a fail and pass dataset using a user defined quality cutoff
Python
1
star
29

determine-gender

Scripts to determine the gender of samples in exome and transcriptome sequencing
Python
1
star
30

combine_images

Bit of Python code to resize and combine images
Python
1
star